Senior Bioinformatics

Location:

Poland, Europe

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Your responsibilities:

  • Scientific pipeline development
    technologies used: R/Python + nextflow + docker / singularity, HPC
  • Various scenarios: either designing the algorithm from scratch (in tight collaboration with stakeholders) or taking stakeholder’s algorithm and productionalizing it (i.e. turning it from a rough script/draft to a robust, tested, performant pipeline)
  • R/Python package development
  • Code review for other team members
  • Data integration pipelines – i.e. a stakeholder requests a report that would answer a specific set of questions based on data already present and third party databases – our tasks here involve data extraction from databases, transformation, and rendering of an HTML report
  • Maintaining CI/CD
  • Facilitating meetings (occasionally – cross-team, internal or stakeholder meetings)
  • Gathering and refining requirements from stakeholders and other teams

We are looking for you, if you have:

  • Minimum 4 years of experience in coding in R
  • Experience in developing R packages
  • Very good knowledge of Shiny
  • Very good knowledge of plotly, ggplot packages
  • Good knowledge of using version system control (Git)
  • Good knowledge of bash command line and Unix environment
  • Knowledge of using Docker
  • Knowledge of HTML, JavaScript, jQuery and CSS
  • Knowledge of mongoDB, SQL is a plus
  • Knowledge of unit testing is a plus
  • English at least at B2 level
  • Good understanding of biological concepts and experimental methods commonly used in molecular biology and interest to learn more
  • Experience with Bioconductor libraries
  • Experience with sequencing/genomic data analysis (NGS, e.g. RNA-Seq, WGS, scRNA-Seq) and familiarity with bioinformatics tools used to process such data
  • Good knowledge of unit testing and front-end testing (i.e. R/Selenium, phantomjs)

 

Skillset:

  • 4+ years of professional experience in R or Python development
  • Experience with communication across teams with different backgrounds (e.g. tech – non-tech, backend – frontend)
  • Python / R package development
  • Good knowledge of: bash, linux
  • Experience with git and git workflows
  • Test Driven Development, good coding practices
  • CI/CD tools (gitlab CI/CD, Jenkins)
  • Containerization (docker)
  • Relational databases (PostgreSQL)
  • Experience in collaborative coding (working concurrently with other team members on the same codebase, code review & feedback system)
  • Communication skills

 

Nice to have:

  • Nextflow
  • Genomics-related analyses or other biological data analysis
  • Biological (or related) educational background
  • Working in an Agile team (we are using kanban)
  • Cloud solutions (AWS)
  • Apache Spark
  • HPC
  • Non-relational databases

We offer:

  • Participation in interesting and demanding projects
  • Flexible working hours
  • A great, non-corporate atmosphere
  • Stable employment conditions (contract of employment or B2B contract)
  • Opportunities for development and promotion
  • Attractive package of benefits
  • Remote work

We reserve the right to contact the selected candidates.

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Why is it
worth joining TTMS?

1

Flexible working hours

Not everyone is comfortable operating a company during the standard 9 a.m. – 5 p.m. hours. We have been successfully running projects for many years despite diversified work patterns.

2

Possibility of remote work

At TTMS, desk-to-desk work is what drives us, but we understand if someone prefers a remote or hybrid model. We are equipped with all the necessary tools to perform either at home or in the office.

3

Great, non-corporate atmosphere

Professionalism, attention to the quality of work and a friendly, informal atmosphere are not mutually exclusive. A flat structure and natural, friendly relationships create the basis for creativity and innovation.

4

Interesting, international projects

We create solutions for medium and large companies, we are present in Poland, Malaysia, Denmark, the UK, Switzerland, and India – the effects of your work will travel around the world. In TTMS you have an influence on the company’s success.

5

Together towards climate neutrality

We select subcontractors to minimize the carbon footprint, organize bush plantings, save peat bogs – all to achieve climate neutrality in 2025. We are glad that we are attracting more and more people who also care about sustainable development and environmental protection.

6

Friendly offices

Our offices are modern spaces that inspire employees and are environmentally friendly. Białystok is the kingdom of Marvel superheroes, Krakow is a soothing tropical forest, Wrocław is an art gallery, and the Lublin branch is a rock “hall of fame”.

Would you like to work for us?

Our offices