Senior Bioinformatics
Your responsibilities:
- Scientific pipeline development
technologies used: R/Python + nextflow + docker / singularity, HPC - Various scenarios: either designing the algorithm from scratch (in tight collaboration with stakeholders) or taking stakeholder’s algorithm and productionalizing it (i.e. turning it from a rough script/draft to a robust, tested, performant pipeline)
- R/Python package development
- Code review for other team members
- Data integration pipelines – i.e. a stakeholder requests a report that would answer a specific set of questions based on data already present and third party databases – our tasks here involve data extraction from databases, transformation, and rendering of an HTML report
- Maintaining CI/CD
- Facilitating meetings (occasionally – cross-team, internal or stakeholder meetings)
- Gathering and refining requirements from stakeholders and other teams
We are looking for you, if you have:
- Minimum 4 years of experience in coding in R
- Experience in developing R packages
- Very good knowledge of Shiny
- Very good knowledge of plotly, ggplot packages
- Good knowledge of using version system control (Git)
- Good knowledge of bash command line and Unix environment
- Knowledge of using Docker
- Knowledge of HTML, JavaScript, jQuery and CSS
- Knowledge of mongoDB, SQL is a plus
- Knowledge of unit testing is a plus
- English at least at B2 level
- Good understanding of biological concepts and experimental methods commonly used in molecular biology and interest to learn more
- Experience with Bioconductor libraries
- Experience with sequencing/genomic data analysis (NGS, e.g. RNA-Seq, WGS, scRNA-Seq) and familiarity with bioinformatics tools used to process such data
- Good knowledge of unit testing and front-end testing (i.e. R/Selenium, phantomjs)
Skillset:
- 4+ years of professional experience in R or Python development
- Experience with communication across teams with different backgrounds (e.g. tech – non-tech, backend – frontend)
- Python / R package development
- Good knowledge of: bash, linux
- Experience with git and git workflows
- Test Driven Development, good coding practices
- CI/CD tools (gitlab CI/CD, Jenkins)
- Containerization (docker)
- Relational databases (PostgreSQL)
- Experience in collaborative coding (working concurrently with other team members on the same codebase, code review & feedback system)
- Communication skills
Nice to have:
- Nextflow
- Genomics-related analyses or other biological data analysis
- Biological (or related) educational background
- Working in an Agile team (we are using kanban)
- Cloud solutions (AWS)
- Apache Spark
- HPC
- Non-relational databases
We offer:
- Participation in interesting and demanding projects
- Flexible working hours
- A great, non-corporate atmosphere
- Stable employment conditions (contract of employment or B2B contract)
- Opportunities for development and promotion
- Attractive package of benefits
- Remote work
We reserve the right to contact the selected candidates.
Why is it
worth joining TTMS?
Flexible working hours
Not everyone is comfortable operating a company during the standard 9 a.m. – 5 p.m. hours. We have been successfully running projects for many years despite diversified work patterns.
Possibility of remote work
At TTMS, desk-to-desk work is what drives us, but we understand if someone prefers a remote or hybrid model. We are equipped with all the necessary tools to perform either at home or in the office.
Great, non-corporate atmosphere
Professionalism, attention to the quality of work and a friendly, informal atmosphere are not mutually exclusive. A flat structure and natural, friendly relationships create the basis for creativity and innovation.
Interesting, international projects
We create solutions for medium and large companies, we are present in Poland, Malaysia, Denmark, the UK, Switzerland, and India – the effects of your work will travel around the world. In TTMS you have an influence on the company’s success.
Together towards climate neutrality
We select subcontractors to minimize the carbon footprint, organize bush plantings, save peat bogs – all to achieve climate neutrality in 2025. We are glad that we are attracting more and more people who also care about sustainable development and environmental protection.
Friendly offices
Our offices are modern spaces that inspire employees and are environmentally friendly. Białystok is the kingdom of Marvel superheroes, Krakow is a soothing tropical forest, Wrocław is an art gallery, and the Lublin branch is a rock “hall of fame”.
Would you like to work for us?
Sending CV
Include information about technical skills, knowledge of programming languages and IT tools, and possibly experience in projects.
Phone Screening
The interview is aimed at assessing the candidate’s suitability for the position and verifying basic information from the CV. It is also an opportunity to discuss the candidate’s expectations and briefly present the job description and working conditions.
HR + technical meeting
We talk about the candidate’s professional experience, but also expectations regarding the new job. This is also the moment to check references and confirm the authenticity of the information provided, which allows you to get to know the candidate better and assess his fit with the company’s organizational culture.
Client company meeting
The candidate is introduced to the client. This stage aims to match the future employee to a specific project, taking into account both their technical skills and design preferences, which maximizes the chances of successful cooperation.
Employment
We sign an agreement that includes the terms of cooperation, scope of duties, remuneration and other key aspects of employment, such as the rights and obligations of both parties. From now on, the candidate becomes an official employee of the company.
Onboarding + first day of work
A comprehensive process of familiarizing a new employee with the organization, team and tools, aimed at making it easier for him to join work as quickly and effectively as possible. In TTMS, we use an internal e-Learning platform to conduct modern onboarding.
Our offices
Warsaw
The heart of our company and our command center
The Management Board of the company and management of individual business areas function here. On a daily basis, it is here that the most important, strategic and business decisions are made, as well as pro-ecological iniciatives. The Warsaw branch – located in Varso Tower – aims to be the first to create a fully eco-friendly office using renewable Energy and environmentally friendly materials, which is confirmed by the BREEM certificate.